[ submitted ] [ 2020 ] [ 2019 ] [ 2018 ] [ 2017 ] [ 2016 ] [ 2015 ] [ 2014 ] [ 2012 ] [ 2011 ] [ 2010 ] [ 2009 ] [ 2008 ] [ 2007 ] [ 2006 ] [ 2005 ] [ 2004 ] [ 2003 ]


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submitted

79 Recent Advances and Prospects in the Research of Nascent Adhesions
B. H. Stumpf, A. Ambriovic-Ristov, A. Radenovic and A.‐S. Smith
submitted to Frontiers in Physiology, 2020
78 Coexistence of long and short DNA constructs within adhesion plaques
L. Li, M. A. Kamal, H. Stumpf, F. Thibaudau, K. Sengupta, A.-S. Smith
submitted, 2020
bioRxiv
77 Molecular Scale Spatio-Chemical Control of the Activating-Inhibitory Signal Integration in NK Cells
E. Toledo, G. Le Saux, L. Li, M. Rosenberg, Y. Keidar, V. Bhingardive, A. Edri, U. Hadad, C. Di Primo, T. Buffeteau, A.-S. Smith, A. Porgador, M. Schvartzman
submitted, 2020
bioRxiv
76 Relation between tissue homeostasis and mechanosensitivity in model epithelium
S. Kaliman, M. Hubert, C. Wollwick, S. Gehrer, D. Vurnek, F. Rehfeld, D. Dudziak, A.-S. Smith
submitted to Nature Physics, 2020
63 Microswimming with Inertia
O. Trosman, A. Sukhov, J. Pande, S. Ziegler, M. Hubert, J. Harting, and A.-S. Smith
in preparation for Phys. Rev. Fluids, 2020


2020

75 Catalytic Flow With a Coupled Finite Difference – Lattice Boltzmann Scheme
N. Kulyk, D. Berger, A.-S. Smith, and J. Harting
accepted for Computer Physics Communications, 2020
arXiv
74 Spatial organization of apical membrane traffic at the tip of growing tobacco pollen tubes
G. Grebnev, M. Cvitković, A.-S. Smith, B. Kost
accepted for Plant Physiology, 2020
73 Adsorption of Aspartate Derivatives to Calcite Surfaces in Aqueous Environment
R. Stepić, L. Jurković, K. Klementyeva, M. Ukrainczyk, M. Gredičak, D. M. Smith, D. Kralj, and A.-S. Smith
Cryst. Growth Des., 20, 2853, 2020
DOI: 10.1021/acs.cgd.0c00061 Download
72 Statistical physics of an elastically pinned membrane: General relation between active fluctuations and protein binding rates applied to the problem of macrophage
J. A. Janeš, D. Schmidt, U. Seifert, R. Merkel, A.-S. Smith
accepted for Faraday discussions, 2020
71 Structural characterization of an ionic liquid in bulk and in nano-confined environment using data from MD simulations
N. Vučemilović-Alagić, R. D. Banhatti, R. Stepić, C. Wick, D. Berger, M. Gaimann, A. Baer, J. Harting, D. M. Smith, and A.-S. Smith
Data in brief, 28, 104794, 2020
DOI: 10.1016/j.dib.2019.104794 Download
70 Cu Carbonyls Enhance the Performance of Ru-based SILP Water-Gas Shift Catalysts: A Combined in-situ DRIFTS and DFT Study
D. Blaumeiser, R. Stepić, P. Wolf, C. Wick, M. Haumann, P. Wasserscheid, D. M. Smith, A.-S. Smith, T. Bauer, and J. Libuda
Catal. Sci. Technol., 10, 252, 2020
DOI: 10.1039/C9CY01852B Download


2019

69 A general perturbative approach for bead-based microswimmers reveals rich self-propulsion phenomena
S. Ziegler, M. Hubert, N. Vandewalle, J. Harting, and A.-S. Smith
New J. Phys., 21, 113017, 2019
DOI: 10.1088/1367-2630/ab4fc2 Download
68 Exploring Reactive Conformations of Coenzyme A during Binding and Unbinding to Pyruvate Formate-Lyase
M. Hanževački, R. D. Banhatti, K. Čondić-Jurkić, A.-S. Smith, and D. M. Smith
J. Phys. Chem. A, 123, 9345, 2019
DOI: 10.1021/acs.jpca.9b06913 Download
67 Capillary assemblies in a rotating magnetic field
G. Grosjean, M. Hubert, Y. Collard, A. Sukhov, J. Harting, A.-S. Smith, and N. Vandewalle
Soft Matter, 15, 9093, 2019
DOI: 10.1039/C9SM01414D Download
66 A comprehensive Brownian Dynamics approach for the determination of non-ideality parameters from analytical ultracentrifugation
M. Uttinger, S. Wawra, T. Guckeisen, J. Walter, A. Baer, T. Thajudeen, P. Sherwood, A.-S. Smith, A. Wagemans, W. Stafford, and W. Peukert
Langmuir, 35, 11491, 2019
DOI: 10.1021/acs.langmuir.9b01916 Download
65 Geometric Effects in Random Assemblies of Ellipses
J. Lovrić, S. Kaliman, W. Barfuß, G. E. Schröder-Turk, and A.-S. Smith
Soft Matter, 15, 8566, 2019
DOI: 10.1039/C9SM01067J Download
64 The Impact of Rate Formulations on Stochastic Molecular Motor Dynamics
R. Blackwell, D. Jung, M. Bukenberger, and A.-S. Smith
Sci Rep, 9, 18373, 2019
DOI: 10.1038/s41598-019-54344-2 Download
62 Optimal motion of triangular magnetocapillary swimmers
A. Sukhov, S. Ziegler, Q. Xie, O. Trosman, J. Pande, G. Grosjean, M. Hubert, N. Vandewalle, A.-S. Smith, and J. Harting
J. Chem. Phys., 151, 124707, 2019
DOI: 10.1063/1.5116860 Download
61 Improving the Performance of Supported Ionic Liquid Phase (SILP) catalysts for the Ultra-Low-Temperature Water-Gas Shift Reaction Using Metal Salt Additives
P. Wolf, M. Aubermann, M. Wolf, T. Bauer, D. Blaumeiser, R. Stepić, C. R. Wick, D. M. Smith, A.-S. Smith, P. Wasserscheid, J. Libuda, and M. Haumann
Green Chem., 21, 5008, 2019
DOI: 10.1039/C9GC02153A Download
60 Statistical Mechanics of an Elastically Pinned Membrane: Equilibrium Dynamics and Power Spectrum
J. A. Janeš, D. Schmidt, U. Seifert, and A.-S. Smith
Biophys. J., 117, 3, 2019
DOI: 10.1016/j.bpj.2019.06.036 Download
59 Computational Study of Glycerol Binding within the Active Site of Coenzyme B12-Dependent Diol Dehydratase
L. Bilić, D. Barić, R. D. Banhatti, D. M. Smith, and B. Kovačević
J. Phys. Chem. B, 123, 6178, 2019
DOI: 10.1021/acs.jpcb.9b04071 Download
58 Insights from Molecular Dynamics Simulations on Structural Organization and Diffusion of an Ionic Liquid at Solid and Vacuum Interfaces
N. Vučemilović-Alagić, R. D. Banhatti, R. Stepić, C. Wick, M. Gaimann, A. Baer, D. Berger, J. Harting, D. M. Smith, and A.-S. Smith
J. Colloid Interface Sci., 553, 350, 2019
DOI: 10.1016/j.jcis.2019.06.017 Data in Brief
57 The Influence of Chemical Change on Protein Dynamics: A Case Study with Pyruvate Formate-Lyase
M. Hanževački, K. Čondić-Jurkić, R. D. Banhatti, A.-S. Smith, and D. M. Smith
Chem. Eur. J., 25, 8741, 2019
DOI: 10.1002/chem.201900663 Download Cover Profile
56 Water in an Electric Field does not Dance Alone: The relation between equilibrium structure, time dependent viscosity and molecular motions
A. Baer, Z. Miličević, D. M. Smith, and A.-S. Smith
J. Mol. Liq., 282, 303, 2019
DOI: 10.1016/j.molliq.2019.02.055 Download
55 Semi-automatic Cell Correspondence Analysis using Iterative Point Cloud Registration
S. Chen*, S. Gehrer*, S. Kaliman, N. Ravikumar, A. Becit, M. Aliee, D. Dudziak, R. Merkel, A.-S. Smith, and A. Maier
Informatik-Aktuell, Bildverarbaitung fur die Medizin, 116-121, 2019
DOI: 10.1007/978-3-658-25326-4_26 Download
54 Universal Hidden Order in Amorphous Cellular Geometries
M. Klatt, J. Lovrić, D. Chen, S. Kapfer, F. Schaller, P. Schönhöfer, B. Gardiner, A.-S. Smith, G. Schröder-Turk, and S. Torquato
Nat. Comm., 10, 811, 2019
DOI: 10.1038/s41467-019-08360-5 Download
53 Physics of Protein-mediated Cell Adhesion
K. Sengupta and A.-S. Smith
in Physics of Biological Membranes, edt. P. Bassereau and P. Sens, Springer, 399-435, 2019
DOI: 10.1007/978-3-030-00630-3
52 Giant Unilamellar Vesicles
A.-S. Smith and K. Sengupta
in The Giant Vesicle Book, edt. C. Marques and R. Dimova, Taylor and Francis, 2019
Abstract
51 Statistical Mechanics of an Elastically Pinned Membrane: Static Profile and Correlations
J. A. Janeš, H. Stumpf, D. Schmidt, U. Seifert, and A.-S. Smith
Biophys. J., 2, 116, 2019
DOI: 10.1016/j.bpj.2018.12.003 Download
50 Mechanism of the Water-Gas Shift Reaction Catalyzed by Efficient Ruthenium Based Catalysts
R. Stepić, C. R. Wick, V. Strobel, D. Berger, N. Vučemilović-Alagić, M. Haumann, P. Wasserscheid, A.-S. Smith, and D. M. Smith
Angew. Chem., 58, 741, 2019
DOI: 10.1002/anie.201811627 Download

2018

49 Dynamic Equilibria in Supported Ionic Liquid Phase (SILP) Catalysis: In-Situ IR Spectroscopy Identifies [Ru(CO)xCly]n Species in Water Gas Shift Catalysis
T. Bauer, R. Stepić, P. Wolf, F. Kollhoff, W. Karawacka, C. Wick, M. Haumann, P. Wasserscheid, D. M. Smith, A.-S. Smith, and J. Libuda
Catal. Sci. Technol. 8, 344, 2018
DOI: 10.1039/C7CY02199B Download

2017

48 Structural Basis for the Shielding Function of the Dynamic Trypanosome VSG Coat
T. Bartossek, N. G. Jones, C. Schäfer, M. Cvitković, M. Glogger, H. R. Mott, J. Kuper, M. Brennich, M. Carrington, A.-S. Smith, S. Fenz, C. Kisker, and M. Engstler
Nature Microbiology 2, 1523, 2017
DOI: 10.1038/s41564-017-0013-6
47 General Asymptotic Expansions of the Hypergeometric Function with Two Large Parameters
M. Cvitković, A.-S. Smith, and J. Pande
J. Phys. A: Math. Theor. 50, 265206, 2017
DOI: 10.1088/1751-8121/aa7213 Download
46 Membrane fluctuations mediate lateral interactions between cadherin bonds
S. Fenz, T. Bihr, D. Schmidt, R. Merkel, U. Seifert, K. Sengupta, and A.-S. Smith
Nature Physics 13, 906, 2017
DOI: 10.1038/nphys4138 Download
45 Effect of body deformability on microswimming
J. Pande, L. Merchant, T. Krüger, J. Harting, and A.-S. Smith
Soft Matter 13, 3984, 2017
DOI: 10.1039/C7SM00181A Download
44 Measuring the invisible – Determining the size of growing nanodomains using the “inverse FCS”
S. F. Fenz , A.-S. Smith, and C. Monzel
Biophysical Journal 112, 2245, 2017
DOI: 10.1016/j.bpj.2017.04.014 Download
43 Setting the pace of microswimmers: when increasing viscosity speeds up self-propulsion
J. Pande, L. Merchant, T. Krüger, J. Harting, and A.-S. Smith
New J. Phys. 19, 053024, 2017
DOI: 10.1088/1367-2630/aa6e3a Download
42 Lattice Boltzmann simulations of the bead-spring microswimmer with a responsive stroke—from an individual to swarms
K. Pickl, J. Pande, H. Köstler, U. Rüde, and A.-S. Smith
J Phys.: Condens. Matter 29, 124001, 2017
DOI: 10.1088/1361-648X/aa5a40 Download
41 Physical determinants of bipolar mitotic spindle assembly and stability in fission yeast
R. Blackwell, C. Edelmaier, O. Sweezy-Schindler, A. Lamson, Z. R. Gergely, E. O’Toole, A. Crapo, L. E. Hough, J. R. McIntosh, M. A. Glaser, and M. D. Betterton
Sci. Adv. 3, 1601603, 2017
DOI: 10.1126/sciadv.1601603 Download
40 Radial growth in two dimensions revisited: The effect of finite density, binding affinity, reaction rates and diffusion
T. Bihr, F.-Z. Sada, U. Seifert, R. Klupp Taylor, and A.-S. Smith
Adv. Mater. Interfaces 4, 1600310, 2017
DOI: 10.1002/admi.201600310 Download

2016

39 Limits of applicability of the Voronoi tessellation determined by centres of cell nuclei to epithelium morphology
S. Kaliman, C. Jayachandran, F. Rehfeldt, and A.-S. Smith
Front. Physiol. 7, 551, 2016
DOI: 10.3389/fphys.2016.00551 Download
38 Biophysics: Alive and twitching
A.-S. Smith
Nat. Phys. 12, 378, 2016
DOI: 10.1038/nphys3703 Download
37 Nanometric Thermal Fluctuations of Weakly Confined Bio-membranes Measured with Microsecond Time-Resolution
C. Monzel, D. Schmidt, U. Seifert, A.-S. Smith, R. Merkel, and K. Sengupta
Soft Matter 12, 4755, 2016
DOI: 10.1039/C6SM00412A Download

2015

36 Measuring Fast Stochastic Displacements of Bio-Membranes with Dynamic Optical Displacement Spectroscopy
C. Monzel, D. Schmidt, C. Kleusch, D. Kirchenbüchler, U. Seifert, A.-S. Smith, K. Sengupta, and R. Merkel
Nat. Commun. 6, 8162, 2015
DOI: 10.1038/ncomms9162 Download
35 Crowding of receptors induces ring-like adhesions in model membranes
D. Schmidt, T. Bihr, S. Fenz, R. Merkel, U. Seifert, K. Sengupta, and A.-S. Smith
BBA: Mol. Cell Res. 1853, 2984, 2015
DOI: 10.1016/j.bbamcr.2015.05.025 Download
34 Multiscale approaches to protein-mediated interactions between membranes-Relating microscopic and macroscopic dynamics in radially growing adhesions
T. Bihr, U. Seifert, and A.-S. Smith
New J. Phys. 18, 083016, 2015
DOI: 10.1088/1367-2630/17/8/083016 Download
33 Complementary Molecular Dynamics and X-Ray Reflectivity Study of an Imidazolium-Based Ionic Liquid at a Neutral Sapphire Interface
Z. Brkljača, M. Klimczak, Z. Miličević, M. Weisser, N. Taccardi, P. Wasserscheid, D. M. Smith, A. Magerl, and A.-S. Smith
J. Phys. Chem. Lett. 6, 549, 2015
DOI: 10.1021/jz5024493 Download
32 Forces and shapes as determinants of micro-swimming: Effect on synchronisation and the utilisation of drag
J. Pande and A.-S. Smith
Soft Matter 11, 2364, 2015
DOI: 10.1039/C4SM02611J Download

2014

31 Parallel Simulations of Self-propelled Microorganisms
K. Pickl, M. Hofmann, T. Preclik, H. Köstler, A.-S. Smith, U. Rüde
Advances in Parallel Computing, 25, 395, 2016
DOI: 10.3233/978-1-61499-381-0-395 Download
30 Association Rates of Membrane-Coupled Cell Adhesion Molecules
T. Bihr, S. Fenz, E. Sackmann, R. Merkel, U. Seifert, K. Sengupta, A.-S. Smith
Biophys. J. 107, L33, 2014
DOI: 10.1016/j.bpj.2014.10.033 Download
29 Calculating CD Spectra of Flexible Peptides: An Assessment of TD-DFT Functionals
Z. Brkljača, M. Mališ, D. M. Smith, and A.-S. Smith
J. Chem. Theory Comput. 10, 3270, 2014
DOI: 10.1021/ct500071t Download
28 Establishing conditions for simulating hydrophobic solutes in electric fields by molecular dynamics
Z. Miličević, S. J. Marrink, A.-S. Smith, and D. M. Smith
J. Mol. Model. 20, 2359, 2014
DOI: 10.1007/s00894-014-2359-5 Download
27 Signature of a Nonharmonic Potential as Revealed from a Consistent Shape and Fluctuation Analysis of an Adherent Membrane
D. Schmidt, C. Monzel, T. Bihr, R. Merkel, U. Seifert, K. Sengupta, and A.-S. Smith
Phys. Rev. X 4, 021023, 2014
DOI: 10.1103/PhysRevX.4.021023 Download
26 Novel Growth Regime of MDCK II Model Tissues on Soft Substrates
S. Kaliman, C. Jayachandran, F. Rehfeld, and A.-S. Smith
Biophys. J. 106, L25, 2014
DOI: 10.1016/j.bpj.2013.12.056 Download
25 Rhodomyrtals A–D, four unusual phloroglucinol-sesquiterpene adducts from Rhodomyrtus psidioides
Q. Shou, J. E. Smith, H. Mon, Z. Brkljača, A.-S. Smith, D. M. Smith, H. J. Griesser, and Hans Wohlmuth
RSC Adv. 4, 13514, 2014
DOI: 10.1039/C4RA00154K Download
24 Facile colloidal coating of polystyrene nanospheres with tunable gold dendritic patches
H. Bao, T. Bihr, A.-S. Smith, and R. N. Klupp Taylor
Nanoscale 6, 3954, 2014
DOI: 10.1039/C3NR04016J Download
23 Physics of cell adhesion: some lessons from cell-mimetic systems
E. Sackmann and A.-S. Smith
Soft Matter 10, 1644, 2014
DOI: 10.1039/C3SM51910D Download

2012

22 Nucleation of Ligand-Receptor Domains in Membrane Adhesion
T. Bihr, U. Seifert, and A.-S. Smith
Phys. Rev. Lett. 109, 258101, 2012
DOI: 10.1103/PhysRevLett.109.258101 Download
21 Coexistence of dilute and densely packed domains of ligand-receptor bonds in membrane adhesion
D. Schmidt, T. Bihr, U. Seifert, and A.-S. Smith
EPL 99, 38003, 2012
DOI: 10.1209/0295-5075/99/38003 Download
20 All good things come in threes—Three beads learn to swim with lattice Boltzmann and a rigid body solver
K. Pickl, J. Götz, K. Iglberger, J. Pande, K. Mecke, A.-S. Smith, and U. Rüde
J. Comput. Sci. 3, 374, 2012
DOI: 10.1016/j.jocs.2012.04.009 Download
19 Calculation of the CD Spectrum of a Peptide from Its Conformational Phase Space: The Case of Met-enkephalin and Its Unnatural Analogue
Z. Brkljača, K. Čondić-Jurkić, A.-S. Smith, and D. M. Smith
J. Chem. Theory Comput. 8, 1694, 2012
DOI: 10.1021/ct200868y Download
18 The Protonation States of the Active-Site Histidines in (6–4) Photolyase
K. Čondić-Jurkić, A.-S. Smith, H. Zipse, and D. M. Smith
J. Chem. Theory Comput. 8, 1078, 2012
DOI: 10.1021/ct2005648 Download

2011

17 Switching from Ultraweak to Strong Adhesion
S. F. Fenz, T. Bihr, R. Merkel, U. Seifert, K. Sengupta, and A.-S. Smith
Adv. Mater. 23, 2622, 2011
DOI: 10.1002/adma.201004097 Download
16 Inter-membrane adhesion mediated by mobile linkers: Effect of receptor shortage
S. F. Fenz, A.-S. Smith, R. Merkel, and K. Sengupta
Soft Matter 7, 952, 2011
DOI: 10.1039/C0SM00550A Download
15 Two intertwined facets of adherent membranes: membrane roughness and correlations between ligand–receptors bonds
E. Reister, T. Bihr, U. Seifert, and A.-S. Smith
New J. Phys. 13, 025003, 2011
DOI: 10.1088/1367-2630/13/2/025003 Download

2010

14 Physics challenged by cells
A.-S. Smith
Nat. Phys. 6, 726, 2010
DOI: 10.1038/nphys1798 Download
13 Inferring spatial organization of bonds within adhesion clusters by exploiting fluctuations of soft interfaces
A.-S. Smith, S. F. Fenz, and K. Sengupta
EPL 89, 28003, 2010
DOI: 10.1209/0295-5075/89/28003 Download

2009

12 Progress in Mimetic Studies of Cell Adhesion and the Mechanosensing
A.-S. Smith and E. Sackmann
ChemPhysChem 10, 66, 2009
DOI: 10.1002/cphc.200800683 Download

2008

11 Dynamics of Specific Vesicle-Substrate Adhesion: From Local Events to Global Dynamics
E. Reister-Gottfried, K. Sengupta, B. Lorz, E. Sackmann, U. Seifert, and A.-S. Smith
Phys. Rev. Lett. 101, 208103, 2008
DOI: 10.1103/PhysRevLett.101.208103 Download
10 Force-induced growth of adhesion domains is controlled by receptor mobility
A.-S. Smith, K. Sengupta, S.e Goennenwein, U. Seifert, and E. Sackmann
Proc. Natl. Acad. Sci. U.S.A. 105, 6906, 2008
DOI: 10.1073/pnas.0801706105 Download

2007

9 Adhesion of Giant Vesicles Mediated by Weak Binding of Sialyl-LewisX to E-Selectin in the Presence of Repelling Poly(ethylene glycol) Molecules
B. G. Lorz, A.-S. Smith, C. Gege, and Erich Sackmann
Langmuir 23, 12293, 2007
DOI: 10.1021/la701824q Download
8 Vesicles as a model for controlled (de-)adhesion of cells: a thermodynamic approach
A.-S. Smith and U. Seifert
Soft Matter 3, 275, 2007
DOI: 10.1039/B611892E Download

2006

7 Force-Controlled Equilibria of Specific Vesicle-Substrate Adhesion
A.-S. Smith, B. G. Lorz, S. Goennenwein, and E. Sackmann
Biophys. J. 90, L52, 2006
DOI: 10.1529/biophysj.105.079426 Download
6 Antagonist-Induced Deadhesion of Specifically Adhered Vesicles
A.-S. Smith, B. G. Lorz, U. Seifert, and E. Sackmann
Biophys. J. 90, 1064, 2006
DOI: 10.1529/biophysj.105.062166 Download

2005

5 The total solute-water correlation function for Lennard-Jones particles
A.-S. Smith
Fizika A-Zagreb 14, 187, 2005
Abstract Download
4 Force-Induced De-Adhesion of Specifically Bound Vesicles:  Strong Adhesion in Competition with Tether Extraction
A.-S. Smith and U. Seifert
Langmuir 21, 11357, 2005
DOI: 10.1021/la051303f Download
3 Effective adhesion strength of specifically bound vesicles
A.-S. Smith and U. Seifert
Phys. Rev. E 71, 061902, 2005
DOI: 10.1103/PhysRevE.71.061902 Download

2004

2 Pulling Tethers from Adhered Vesicles
A.-S. Smith, E. Sackmann, and U. Seifert
Phys. Rev. Lett. 92, 208101, 2004
DOI: 10.1103/PhysRevLett.92.208101 Download

2003

1 Effects of a pulling force on the shape of a bound vesicle
A.-S. Smith, E. Sackmann, and U. Seifert
Europhys. Lett. 64, 281, 2003
DOI: 10.1209/epl/i2003-00499-9 Download